• Ancient sedimentary DNA shows rapid post-glacial colonisation of Iceland followed by relatively stable vegetation until the Norse settlement (Landnám) AD 870 

      Alsos, Inger Greve; Lammers, Youri; Kjellman, Sofia Elisabeth; Merkel, Marie Føreid; Bender, Emma Marie; Rouillard, Alexandra; Erlendsson, Egill; Gudmundsdottir, Esther Ruth; Benediktsson, Ívar Örn; Farnsworth, Wesley Randall; Brynjólfsson, Skafti; Gísladóttir, Guðrún; Eddudóttir, Sigrún Dögg; Schomacker, Anders (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-04-08)
      Understanding patterns of colonisation is important for explaining both the distribution of single species and anticipating how ecosystems may respond to global warming. Insular flora may be especially vulnerable because oceans represent severe dispersal barriers. Here we analyse two lake sediment cores from Iceland for ancient sedimentary DNA to infer patterns of colonisation and Holocene vegetation ...
    • Clitellate worms (Annelida) in late-glacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway 

      Lammers, Youri; Clarke, Charlotte; Erséus, Christer; Brown, Antony Gavin; Edwards, Mary Elizabeth; Gielly, Ludovic; Haflidason, Haflidi; Mangerud, Jan; Rota, E; Svendsen, John-Inge; Alsos, Inger Greve (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-11-26)
      While there are extensive macro‐ and microfossil records of a range of plants and animals from the Quaternary, earthworms and their close relatives amongst annelids are not preserved as fossils and therefore the knowledge of their past distributions is limited. This lack of fossils means that clitellate worms (Annelida) are currently underused in palaeoecological research, even though they can provide ...
    • Environmental palaeogenomic reconstruction of an Ice Age algal population 

      Lammers, Youri; Heintzman, Peter D.; Alsos, Inger Greve (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-02-16)
      Palaeogenomics has greatly increased our knowledge of past evolutionary and ecological change, but has been restricted to the study of species that preserve either as or within fossils. Here we show the potential of shotgun metagenomics to reveal population genomic information for a taxon that does not preserve in the body fossil record, the algae <i>Nannochloropsis</i>. We shotgun sequenced two ...
    • High resolution ancient sedimentary DNA shows that alpine plant diversity is associated with human land use and climate change 

      Garces Pastor, Sandra; Alsos, Inger Greve; Coissac, Eric; Lavergne, Sébastien; Schwörer, Christoph; Theurillat, Jean-Paul; Heintzman, Peter D.; Wangensteen, Owen S.; Tinner, Willy; Rey, Fabian; Heer, Martina; Rutzer, Astrid; Walsh, Kevin; Lammers, Youri; Brown, Antony G.; Goslar, Tomasz; Rijal, Dilli P.; Karger, Dirk N.; Pellissier, Loïc; Heiri, Oliver (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-11-04)
      The European Alps are highly rich in species, but their future may be threatened by ongoing changes in human land use and climate. Here, we reconstructed vegetation, temperature, human impact and livestock over the past ~12,000 years from Lake Sulsseewli, based on sedimentary ancient plant and mammal DNA, pollen, spores, chironomids, and microcharcoal. We assembled a highly-complete local DNA ...
    • High-throughput sequencing of African chikanda cake highlights conservation challenges in orchids 

      Veldman, Sarina; Gravendeel, Barbara; Otieno, Joseph; Lammers, Youri; Duijm, Elza; Nieman, Aline; Bytebier, Benny; Ngugi, Grace; Martos, Florent; van Andel, TR; de Boer, Hugo (Journal article; Tidsskriftartikkel; Peer reviewed, 2017-04-01)
      Chikanda is a traditional dish made with wild-harvested ground orchid tubers belonging to three orchidioid genera, Disa, Satyrium and Habenaria, all of which are CITES appendix II-listed. Identification of collected orchid tubers is very difficult and documentation of constituent species in prepared chikanda has hitherto been impossible. Here amplicon metabarcoding was used in samples of six prepared ...
    • Holocene floristic diversity and richness in northeast Norway revealed by sedimentary ancient DNA (sedaDNA) and pollen 

      Clarke, Charlotte; Edwards, Mary Elizabeth; Brown, Antony Gavin; Gielly, Ludovic; Lammers, Youri; Heintzman, Peter D.; Murguzur, Francisco Javier Ancin; Bråthen, Kari Anne; Goslar, Tomasz; Alsos, Inger Greve (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-10-30)
      We present a Holocene record of floristic diversity and environmental change for the central Varanger Peninsula, Finnmark, based on ancient DNA extracted from the sediments of a small lake (<i>sed</i>aDNA). The record covers the period c. 10 700 to 3300 cal. a BP and is complemented by pollen data. Measures of species richness, sample evenness and beta diversity were calculated based on <i>sed</i>aDNA ...
    • Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations 

      Capo, Eric; Giguet-Covex, Charline; Rouillard, Alexandra; Nota, Kevin; Heintzman, Peter D.; Vuillemin, Aurèle; Ariztegui, Daniel; Arnaud, Fabien; Belle, Simon; Bertilsson, Stefan; Bigler, Christian; Bindler, Richard; Brown, Antony G.; Clarke, Charlotte L.; Crump, Sarah E.; Debroas, Didier; Englund, Göran; Ficetola, Gentile Francesco; Garner, Rebecca E.; Gauthier, Joanna; Gregory-Eaves, Irene; Heinecke, Liv; Herzschuh, Ulrike; Ibrahim, Anan; Kisand, Veljo; Kjær, Kurt H.; Lammers, Youri; Littlefair, Joanne; Messager, Erwan; Monchamp, Marie-Eve; Olajos, Fredrik; Orsi, William; Pedersen, Mikkel W.; Rijal, Dilli P.; Rydberg, Johan; Spanbauer, Trisha; Stoof-Leichsenring, Kathleen R.; Taberlet, Pierre; Talas, Liisi; Thomas, Camille; Walsh, David A.; Wang, Yucheng; Willerslev, Eske; van Woerkom, Anne; Zimmermann, Heike H.; Coolen, Marco J. L.; Epp, Laura S.; Domaizon, Isabelle; Alsos, Inger G.; Parducci, Laura (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-02-13)
      The use of lake sedimentary DNA to track the long-term changes in both terrestrial and aquatic biota is a rapidly advancing field in paleoecological research. Although largely applied nowadays, knowledge gaps remain in this field and there is therefore still research to be conducted to ensure the reliability of the sedimentary DNA signal. Building on the most recent literature and seven original ...
    • Last Glacial Maximum environmental conditions at Andøya, northern Norway; evidence for a northern ice-edge ecological “hotspot” 

      Alsos, Inger Greve; Sjögren, Per; Brown, Antony G.; Gielly, Ludovic; Merke, Marie Kristine Føreid; Paus, Aage; Lammers, Youri; Edwards, Mary E.; Alm, Torbjørn; Leng, Melanie; Goslar, Tomasz; Langdon, Catherine T.; Bakke, Jostein; van der Bilt, Willem G.M. (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-06-05)
      Andøya on the NW coast of Norway is a key site for understanding the Last Glacial Maximum (LGM) in northern Europe. Controversy has arisen concerning the local conditions, especially about the timing and extent of local glacial cover, maximum July temperatures and whether pine and/or spruce could have grown there. We reviewed all existing data and add newly analysed ancient sedimentary DNA ...
    • Last Glacial Maximum environmental conditions at Andøya, northern Norway; evidence for a northern ice-edge ecological “hotspot” 

      Alsos, Inger Greve; Sjøgren, Per Johan E; Brown, Antony; Gielly, Ludovic; Merkel, Marie Føreid; Paus, Aage; Lammers, Youri; Edwards, Mary E.; Alm, Torbjørn; Leng, Melanie; Goslar, Tomasz; Langdon, Cathrine; Bakke, Jostein; Van Der Bilt, Willem (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-06-05)
      Andøya on the NW coast of Norway is a key site for understanding the Last Glacial Maximum (LGM) in northern Europe. Controversy has arisen concerning the local conditions, especially about the timing and extent of local glacial cover, maximum July temperatures and whether pine and/or spruce could have grown there. We reviewed all existing data and add newly analysed ancient sedimentary DNA ...
    • Late Quaternary dynamics of Arctic biota from ancient environmental genomics 

      Wang, Yucheng; Pedersen, Mikkel W.; Alsos, Inger Greve; De Sanctis, Bianca; Racimo, Fernando; Prohaska, Ana; Coissac, Eric; Owens, Hannah L.; Merkel, Marie Føreid; Fernandez-Guerra, Antonio; Rouillard, Alexandra; Lammers, Youri; Alberti, Adriana; Denoeud, France; Money, Daniel; Ruter, Anthony H.; McColl, Hugh; Larsen, Nicolaj K.; Cherezova, Anna A.; Edwards, Mary E.; Fedorov, Grigory B.; Haile, James; Orlando, Ludovic; Vinner, Lasse; Korneliussen, Thorfinn S.; Beilman, David W.; Bjørk, Anders A.; Cao, Jialu; Dockter, Christoph; Esdale, Julie; Gusarova, Galina; Kjeldsen, Kristian K.; Mangerud, Jan; Rasic, Jeffrey T.; Skadhauge, Birgitte; Svendsen, John Inge; Tikhonov, Alexei N.; Wincker, Patrick; Xing, Yingchun; Zhang, Yubin; Froese, Duane G.; Rahbek, Carsten; Nogues, David B; Holden, Philip B.; Edwards, Neil R.; Durbin, Richard; Meltzer, David J.; Kjær, Kurt H.; Moller, Per; Willerslev, Eske (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-10-20)
      During the last glacial–interglacial cycle, Arctic biotas experienced substantial climatic changes, yet the nature, extent and rate of their responses are not fully understood1,2,3,4,5,6,7,8. Here we report a large-scale environmental DNA metagenomic study of ancient plant and mammal communities, analysing 535 permafrost and lake sediment samples from across the Arctic spanning the past 50,000 years. ...
    • Metagenomics: A viable tool for reconstructing herbivore diet 

      Chua, Physilia Y. S.; Crampton-Platt, Alex; Lammers, Youri; Alsos, Inger G.; Boessenkool, Sanne; Bohmann, Kristine (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-05-10)
      Metagenomics can generate data on the diet of herbivores, without the need for primer selection and PCR enrichment steps as is necessary in metabarcoding. Metagenomic approaches to diet analysis have remained relatively unexplored, requiring validation of bioinformatic steps. Currently, no metagenomic herbivore diet studies have utilized both chloroplast and nuclear markers as reference sequences ...
    • Molecular dietary analyses of western capercaillies (Tetrao urogallus) reveal a diverse diet 

      Chua, Physilia Y. S.; Lammers, Youri; Menoni, Emmanuel; Ekrem, Torbjørn; Bohmann, Kristine; Boessenkool, Sanne; Alsos, Inger Greve (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-07-13)
      Conservation strategies centered around species habitat protection rely on species’ dietary information. One species at the focal point of conservation efforts is the herbivorous grouse, the western capercaillie (Tetrao urogallus), which is an indicator species for forest biodiversity conservation. Non-molecular means used to study their diet are time-consuming and at low taxonomic resolution. This ...
    • Paleoeconomy more than demography determined prehistoric human impact in Arctic Norway 

      Brown, Antony; Rijal, Dilli Prasad; Heintzman, Peter D.; Clarke, Charlotte, L.; Blankholm, Hans Peter; Høeg, Helge I.; Lammers, Youri; Bråthen, Kari Anne; Edwards, M E; Alsos, Inger Greve (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-10-07)
      Population size has increasingly been taken as the driver of past human environmental impact worldwide, and particularly in the Arctic. However, sedimentary ancient DNA (sedaDNA), pollen and archaeological data show that over the last 12,000 years, paleoeconomy and culture determined human impacts on the terrestrial ecology of Arctic Norway. The large Mortensnes site complex (Ceavccagea ¯dgi, 70◦N) ...
    • Plant DNA metabarcoding of lake sediments: How does it represent the contemporary vegetation 

      Alsos, Inger Greve; Lammers, Youri; Yoccoz, Nigel Gilles; Jørgensen, Tina; Sjögren, Per; Gielly, Ludovic; Edwards, Mary E. (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-04-17)
      Metabarcoding of lake sediments have been shown to reveal current and past biodiversity, but little is known about the degree to which taxa growing in the vegetation are represented in environmental DNA (eDNA) records. We analysed composition of lake and catchment vegetation and vascular plant eDNA at 11 lakes in northern Norway. Out of 489 records of taxa growing within 2 m from the lake shore, ...
    • Pollen, macrofossils and sedaDNA reveal climate and land use impacts on Holocene mountain vegetation of the Lepontine Alps, Italy 

      van Vugt, Lieveke; Garces Pastor, Sandra; Gobet, Erika; Brechbühl, Sarah; Knetge, Antonietta; Lammers, Youri; Stengele, Katja; Alsos, Inger Greve; Tinner, Willy; Schwörer, Christoph (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-10-10)
      Both climate change and anthropogenic disturbance affect vegetation composition, but it is difficult to separate these drivers of vegetation change from one another. A better understanding of past vegetation dynamics is necessary to disentangle the influence of different forcing factors and assess future vegetation change. Here we present the first multi-proxy palaeoecological study combining ...
    • Postglacial species arrival and diversity buildup of northern ecosystems took millennia 

      Alsos, Inger Greve; Rijal, Dilli Prasad; Ehrich, Dorothee; Karger, Dirk Nikolaus; Yoccoz, Nigel; Heintzman, Peter D.; Brown, Antony; Lammers, Youri; Pellissier, Loïc; Alm, Torbjørn; Bråthen, Kari Anne; Coissac, Eric; Merkel, Marie Føreid; Alberti, Adriana; Denoeud, France; Bakke, Jostein (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-09-28)
      What drives ecosystem buildup, diversity, and stability? We assess species arrival and ecosystem changes across 16 millennia by combining regional-scale plant sedimentary ancient DNA from Fennoscandia with near-complete DNA and trait databases. We show that postglacial arrival time varies within and between plant growth forms. Further, arrival times were mainly predicted by adaptation to temperature, ...
    • Sedimentary ancient DNA shows terrestrial plant richness continuously increased over the Holocene in northern Fennoscandia 

      Rijal, Dilli Prasad; Heintzman, Peter D.; Lammers, Youri; Yoccoz, Nigel; Lorberau, Kelsey; Pitelkova, Iva; Goslar, Tomasz; Murguzur, Francisco Javier Ancin; Salonen, J. Sakari; Helmens, Karin F.; Bakke, Jostein; Edwards, Mary E.; Alm, Torbjørn; Bråthen, Kari Anne; Brown, Antony; Alsos, Inger Greve (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-07-30)
      The effects of climate change on species richness are debated but can be informed by the past. Here, we generated a sedimentary ancient DNA dataset covering 10 lakes and applied novel methods for data harmonization. We assessed the impact of Holocene climate changes and nutrients on terrestrial plant richness in northern Fennoscandia. We find that richness increased steeply during the rapidly warming ...
    • The sedimentary ancient DNA workflow 

      Heintzman, Peter D.; Nota, Kevin; Rouillard, Alexandra; Lammers, Youri; Murchie, Tyler; Armbrecht, Linda; Garcés-Pastor, Sandra; Vernot, Benjamin (Chapter; Bokkapittel, 2023)
      Sedimentary ancient DNA (sedaDNA) is continuing to revolutionise our understanding of past biological and geological processes by retrieving and analysing the ancient DNA preserved in lake, cave, open terrestrial, midden, permafrozen, and marine environments (Crump, 2021). The study of sedaDNA began in the late 1990s (Coolen and Overmann, 1998) with the first reports of extinct animal sedaDNA in ...
    • Sedimentary ancient DNA: Exploring methods of ancient DNA analysis for different taxonomic groups 

      Lammers, Youri (Doctoral thesis; Doktorgradsavhandling, 2020-02-28)
      This thesis explores the potential of sedimentary ancient DNA (sedaDNA) from lakes as a tool for studying past communities. First it sets out to determine what taxa in the environment are most likely to be detected in lake sediments. For this, vegetation surveys were carried out around eleven different lakes in Norway and the taxa detected based on plant metabarcoding of the lake sediments were ...
    • Shotgun Environmental DNA, Pollen, and Macrofossil Analysis of Lateglacial Lake Sediments From Southern Sweden 

      Parducci, Laura; Alsos, Inger Greve; Unneberg, Per; Pedersen, Mikkel Winther; Han, Lu; Lammers, Youri; Salonen, J. Sakari; Väliranta, Minna; Slotte, Tanja; Wohlfarth, Barbara (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-06-20)
      The lake sediments of Hässeldala Port in south-east Sweden provide an archive of local and regional environmental conditions ~14.5–9.5 ka BP (thousand years before present) and allow testing DNA sequencing techniques to reconstruct past vegetation changes. We combined shotgun sequencing with plant micro- and macrofossil analyses to investigate sediments dating to the Allerød (14.1–12.7 ka BP), Younger ...